Ryan York

Interpretable neural networks reveal global epistasis in yeast

Glass Box UMAP: A Python package for interpretable UMAP via exact feature contributions

A benchmark for the next generation of genotype–phenotype mapping

Assembly and annotation artifacts can lead to problematic protein structural inferences

Biology needs to become prospective

Strategizing the search for bio-utility: A framework for evolution-integrated _in silico_ bioprospecting

MSA-based pLMs encode evolutionary distance but don’t reliably exploit it

Equivalent linear mappings of deep networks are a promising path for biology

A quantitative-genetic decomposition of a neural network